Index A | C | D | E | F | G | I | L | M | P | S A apply_threshold() (diempy.diemtype.DiemType method) C Contig (class in diempy.contigs) copy() (diempy.diemtype.DiemType method) create_contig_matrix() (diempy.diemtype.DiemType method) D diemIrisFromDiemType() (in module diempy.plots) diemIrisFromPlotPrep() (in module diempy.plots) diemLongFromDiemType() (in module diempy.plots) diemLongFromPlotPrep() (in module diempy.plots) diemMultiPairsPlot (class in diempy.plots) diemPairsPlot (class in diempy.plots) diemPlotPrepFromDiemType() (in module diempy.plots) diempy.contigs module diempy.diemtype module diempy.plots module DiemType (class in diempy.diemtype) E export_contigs_to_ind_bed_files() (in module diempy.contigs) F flip_polarity() (in module diempy.diemtype) G GenomeMultiSummaryPlot (class in diempy.plots) GenomeSummaryPlot (class in diempy.plots) GenomicContributionsPlot (class in diempy.plots) GenomicDeFinettiPlot (class in diempy.plots) GenomicMultiDeFinettiPlot (class in diempy.plots) get_intervals_of_state() (diempy.diemtype.DiemType method) I Interval (class in diempy.contigs) intervals_to_bed() (diempy.diemtype.DiemType method) L load_DiemType() (in module diempy.diemtype) M module diempy.contigs diempy.diemtype diempy.plots P polarize() (diempy.diemtype.DiemType method) S save_DiemType() (in module diempy.diemtype) smooth() (diempy.diemtype.DiemType method) sort() (diempy.diemtype.DiemType method)