Index A | C | D | E | F | G | I | L | M | P | S A apply_threshold() (diempy.diemtype.DiemType method) C Contig (class in diempy.contigs) copy() (diempy.diemtype.DiemType method) create_contig_matrix() (diempy.diemtype.DiemType method) D diemIrisFromPlotPrep() (in module diempy.plots) diemLongFromPlotPrep() (in module diempy.plots) diemMultiPairsPlot (class in diempy.plots) diemPairsPlot (class in diempy.plots) diempy.contigs module diempy.diemtype module diempy.plots module DiemType (class in diempy.diemtype) E export_contigs_to_ind_bed_files() (in module diempy.contigs) F flip_polarity() (in module diempy.diemtype) G GenomeMultiSummaryPlot (class in diempy.plots) GenomeSummaryPlot (class in diempy.plots) GenomicContributionsPlot (class in diempy.plots) GenomicDeFinettiPlot (class in diempy.plots) GenomicMultiDeFinettiPlot (class in diempy.plots) get_intervals_of_state() (diempy.diemtype.DiemType method) I Interval (class in diempy.contigs) intervals_to_bed() (diempy.diemtype.DiemType method) L load_DiemType() (in module diempy.diemtype) M module diempy.contigs diempy.diemtype diempy.plots P polarize() (diempy.diemtype.DiemType method) S save_DiemType() (in module diempy.diemtype) smooth() (diempy.diemtype.DiemType method) sort() (diempy.diemtype.DiemType method)